PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025395-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 503aa    MW: 56419.6 Da    PI: 7.6157
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025395-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.84.5e-28229287259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK+ k +++pr+YYrC  a gCpvkk+v+r+ ed +++++tYeg+Hnh+
  NNU_025395-RA 229 YDGCQWRKYGQKTAKRNPCPRAYYRCMVApGCPVKKQVQRCLEDMSILITTYEGTHNHP 287
                    59*************************999****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-30213289IPR003657WRKY domain
SuperFamilySSF1182908.76E-26222289IPR003657WRKY domain
PROSITE profilePS5081126.716223289IPR003657WRKY domain
SMARTSM007741.3E-33228288IPR003657WRKY domain
PfamPF031061.1E-25230287IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MAKEERMMQI DLSLKLGGRE RKEEEEKVQL DGQESEKQPK YEREEAREGK EEQQDESVVN  60
SLKENLTEEH SVLQIEMNRM KEENKLLRKV VEQTMKDYHD LQTKLAIIQE NETKKDPQIF  120
LSVQGGDADT IRPKQVPEIL VDKNQTLSLP SEANNYEKDG ELGLSLSVPS HLHQREKDEP  180
KEKMMTSLKP EQNKLQKIEL SGITSHPPEP STRKAKVTVR ARCQAPTIYD GCQWRKYGQK  240
TAKRNPCPRA YYRCMVAPGC PVKKQVQRCL EDMSILITTY EGTHNHPLPL GATTVASSAS  300
GAANFLLPSG TSGAAIPGGI INDARISIPY QNPHLISPLP YSSSAINNIR GSSNHSKGIV  360
LDLTNNPQEQ FPIPSSSHSQ TKLTYPWMPS NSLYNNSAGR SVNKVGEFPS HQLFSSHRGM  420
DEKQWKMEED KSLTENVSAI ASDPKFRAAV AAAITSFISK ENPNFQPKEP TLVHKDAEHG  480
GSSSNKWCFE SLPSCSKPLW HLR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-20215291176WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246360.10.0PREDICTED: probable WRKY transcription factor 9
TrEMBLA0A061DXG81e-138A0A061DXG8_THECC; WRKY DNA-binding protein 9, putative isoform 1
STRINGVIT_12s0055g00340.t011e-126(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.16e-62WRKY DNA-binding protein 9